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Archive for the ‘Papers for Mac’ Category

A Serial for a Style

Saturday, January 14th, 2012


You may or may not know it, but Papers relies on the fantastic styles provided by the Citation Style Language (CSL) repository to support formatting of your manuscript in hundreds of different styles (more than 1700 in Papers 2.1.8). Despite this large choice, your favorite journal may not be listed there. The best way to get this repository to grow further and cover more fields of research is to get more people to contribute new styles.

In a post on our support pages we show you how to create your own CSL style. A few of you have been adventurous enough to give it a try and have produced new CSL styles for their own use. We helped a few of you as well in the process, and for the first time in Papers 2.1.8, have added new styles that were the fruit of that labor. But there were only a handful of these, and we know there must be dozens more out there, ready to be added to the list.

To boost the process, and provide more incentives to the CSL creators out there, we have decided to start a new initiative, “A Serial for a Style”. The idea is very simple: if you create a CSL style and contribute it to the CSL style repository, we’ll give you a free Papers2 serial number. That’s one of the way we also want to give back to the CSL community.

Here are the specific rules:

- The style must be new – not a duplicate of an existing style
- Your name and email must be in the author or contributor field of the style – we want you to take full ownership (with great power, comes great responsibility, yada, yada)
- The style must use the Creative Commons Attribution-Share Alike 3.0 License (http://creativecommons.org/licenses/by-sa/3.0/) – Papers2 needs a commercial-friendly license, and that’s also the most popular license in the repository
- The style must contain a URL that links back to instructions to authors, or some other authoritative document
- The style must have been submitted to the official CSL repository – please follow the [instructions on the CSL wiki](https://github.com/citation-style-language/styles/wiki), as we want you to make it as easy as possible to the CSL folks that maintain the repository. This means among other things that the style needs to be written in valid CSL version 1.0.
- 1 serial maximum awarded per style – thus, only one contributor per style will get the serial

We also recognize some of you might want to contribute more than one style. We also want to encourage that, but we have to be reasonable in the number of serials we can give away, so here is the rule we will apply:

-1 style –> 1 serial
- 5 styles –> 2 serials
- 10 styles –> 3 serials
- 15 styles –> 4 serials
- …_etc_… with each additional 5 styles corresponding to one additional serial

The above rules are informal, not a binding contract. We just make here a promise that we will award the serials based on contributions to the CSL repository. You just have to trust we will honor our promise. In return, please do not abuse the system and the rules. Finally, note that we don’t know yet for how long we will run this initiative: it might be limited in time.

Papers like you’ve never seen before: Papers 2.1

Wednesday, November 30th, 2011

Papers 2.1 release

When we launched Papers2 in March we knew we still had quite a bit of ground to cover. In March you saw the results of two years of hard work by an amazing team of people.

Although Papers2 might have looked familiar, it was built completely from scratch.

The reason for doing this was so we would be able to make Papers even better in the future, laying the groundwork for some awesome features like the new annotation support in Papers 2.1 and many others that are still to come. The downside is that some of the Papers1 features you were used to, did not make it for the release deadline in March.

We could not just move around some code to bring all Papers1 features to Papers2. Because we were working from the ground up, the foundation that had to be build to accommodate some technically challenging features was very different from Papers1. You can’t build a Cadillac on the framework for a Beetle, and we could not create the features we wanted on top of the Papers1 foundation.

Although there were some technical challenges to be overcome, we promised it was just a matter of time before we brought back all the Papers1 features to Papers2. We knew the blue search tokens were sorely missed, and when we build unified search we also had to do some more work to bring back the search tokens.

Now, it is time for a new Papers2 experience: Papers 2.1

If you were waiting to switch from Papers1 to Papers2 because you could not imagine your workflow without the blue search tokens, then we’d love to welcome you to a new and improved Papers experience. Searching multiple repositories at once with unified search, and using search tokens to refine your query, guarantees you will find the exact papers you want, faster.

When libraries grow, duplications are a common occurrence. We made it easy to bring organization to your library with author merging in Papers1, and now this feature is back again in Papers2.1. Some Papers1 features are still missing, such as journal merging, papers archives, and recent papers for authors and journals. These are still on their way, and will make their Papers2 debut in Papers2.2. You can stay on top of what is coming next on our roadmap.

Aside from bringing familiar features back, we have worked on expanding the number of features in Papers2.

Annotation support was high on the wish list. If it was on your wish list as well, then Santa came early this year because we’ve made annotations a reality for Papers2.1. Not only can you highlight (in different colors!) and add notes anywhere in the text, but your annotations sync with Papers for iPad and iPhone. We believe highlighting and annotating in Papers should be faster than grabbing a highlighter and taking it to a printed article. That is why any text you select with your mouse while holding the command key is automatically highlighted. You can, but do not have to, right-click to select the “highlight” option. Equally simple is note taking: hold the command key and double click anywhere in the article to add a note.

We could go on and on about all the great features we have brought back, and the new ones we have created, but instead we would like to invite you to testdrive them yourself. Download a free 30-day trial of Papers 2.1.

Enjoy Papers2.1!
the mekentosj team

A Papers2 Makeover

Wednesday, July 20th, 2011

Academia can be a treacherous environment, but the promise of unexpected discoveries and groundbreaking research make it only ever more exciting.

Usually we know where we can expect complications to come from; contaminated samples, unexpectedly fast grant-proposal deadline, or uncooperative university administrators. However, sometimes the most shocking dangers surface from unexpected places. One such place can be the weight and magnitude of our library. Yes, knowledge does get heavy, and at times too heavy for office furniture.

Here is a picture of one prominent researcher’s desk as he encountered it one fine morning this week, collapsed under the weight of his library of articles.

Pre-Papers2 Chaos and desctruction

Pre-Papers2 chaos & destruction

Of course the obvious solution was a Papers2 makeover. Now, office furniture remains in tact, notes can be searched and found within seconds, the library can be shared with colleagues across the hall, and organization prevails.

The Papers2 makeover 'after' picture

The Papers2 makeover 'after' picture

Papers Livfe, is Live!

Monday, June 27th, 2011

Papers Livfe

The Papers2 release was much anticipated, and without question in great part because of Papers Livfe. With the response to the Papers2 release being even more successful than anticipated, we ran into scaling concerns with Livfe. To ensure all users would have a troublefree experience taking their libraries Livfe, we made the decision to allow access to users in stages, after we made some more adjustments to the system.

Once it became clear we could not open up Livfe right after releasing Papers2, the team worked around the clock to get Livfe ready for the large influx of users. We are thrilled to finally say Livfe is live!

What’s Livfe all about?
If you have not used Livfe yourself yet, you might be wondering what Livfe really is all about. With Papers Livfe, you can create collections of papers you share with colleagues and friends. Collections can also be made public and shared with the world.

Livfe takes collaborations to a whole new level: working on a paper with a colleague across the world? Share a collection of references important for your work. Sharing can also take the shape of journal clubs or study groups, and Livfe is perfect for this as well. Any collection can become a Livfe collection and shared with any other Papers2 user. Through reviews and comments you can share your thoughts about each article with the other members of your collection.

How Livfe helps you share
Using Papers Livfe you share collections, and your personal reviews for the articles in your collection, with other Papers Livfe users. One central question users have been asking us is whether the PDF files associated with your library entries are shared. Unfortunately, there is no way we can share PDF files through Livfe for copyright reasons. What is shared in Livfe is the metadata for all the articles in your Livfe collection. Other members of your collection are lead to the publishers website to import the PDF themselves.

Our Livfe introduction
Livfe speaks for itself, and doesn’t need too much of an introduction, but we’ve created one anyways.
Enjoy Livfe!
the Mekentosj team

Check out our growing Livfe FAQ and upcoming tutorials. Still have questions about Livfe? Make use of our support system to ask us.

We would love to hear how you are using Papers Livfe in the comments

2 years in the making, 85,000 lines of passion

Tuesday, March 8th, 2011

What a ride it has been, from the day we released the first public preview of Papers it was clear where we wanted to go, and today is an important milestone on this journey.

Today we launch Papers2, a project 2 years in the making, in which we poured our heart and soul and gave everything we got. Yes, we; mekentosj has grown into an amazing team of talented people that is just an absolutely joy to work with. We’re spread over 6 locations, we’re all very different, but what we share is a passion for this product and for making an awesome user experience.

Will Papers2 be perfect, absolutely not, will it do everything you have wished for, absolutely not. But you can bet we’ll give it our everything to make it so in the time to come. Above all we hope that despite the glitches, bugs, and missing features, what shows through is that Papers2 represents the next step in this incredible story.

Enjoy Papers2!
the mekentosj team



Papers Geniuses

Monday, February 14th, 2011

They say good news never comes alone, and so it is. We’ve just announced the countdown towards the release of Papers2 for Mac, a moment we’ve been working towards for the past two years. But in those two years time hasn’t stood still and our Papers user base has grown tremendously. To the point where it started taking its toll. Having to answer over 30.000 emails a year, keeping track of 20.000 forum posts, releasing 15+ updates, AND having to build the next major version of Papers is not an easy feat.

We figured we needed help. We needed a Papers Genius. What is a Papers Genius you might ask? Well something like this:

Papers Genius

“We’re looking for a talented and enthusiastic new team member who wants to help us improve every imaginable aspect of Papers.
You would help us provide better support, an awesome website, great tutorials, and guide both new and pro Papers users. And you would be key in helping us launch the exciting new features and products we’ve been working on!”

We had no clue what kind of person would respond or whether someone would respond at all. Luckily we were blown away by the reactions, the next day we received an email from Dan Quintana, a PhD student neuroscience at the University of Sydney, Australia. The description we had put up fit him perfectly, Dan’s a big Papers fan and has tons of ideas how to improve the program. Unfortunately he is still in the beginning of his PhD and therefore couldn’t join us full-time. We’re very pleased that he nonetheless has agreed to help us out a number of hours per week as a volunteer. You will soon start to see the first improved Papers for iOS tutorials that Dan has produced.

Almost at the same time as Dan’s email we received one from Christine Buske, a final year PhD student at the University of Toronto, Canada. I don’t think we could have found a more suitable person as our first official Paper Genius! Christine is a self-proclaimed Papers addict and she couldn’t wait to join us in making Papers even better and help us launch Papers2.

Christine’s story is in many ways familiar to that of many of us; although she kind of liked working in the lab she quickly discovered that it was not the thing that kept her up at night. Instead, she has taken on an impressive list of activities outside the lab, including copywriting, producing TV commercials, translating research articles and marketing materials, and creating her own websites.

All those skills will come in perfectly handy in her role as Papers Genius. It will be exciting to see Christine join the team and work with Dan and all of us to improve Papers. Not only do we now have an official Papers Genius on board, Christine will also without doubt add some necessary girl power!

Returning to our true Love.

Monday, February 14th, 2011
I love papers

If there’s one thing that I absolutely couldn’t have foreseen 4 years ago, it is the enormous success of what the then just released Papers public preview would become. I still remember sending the first test version to Tom asking, “Do you think people will find it useful?”. Now, after 1.5 million downloads, someone, somewhere in the world, double-clicks the familiar red Papers icon every 5 seconds, 7 days a week, 24 hours a day, to organize his or her personal library of research.

Therefore, we couldn’t be more thrilled to finally announce the imminent arrival of Papers2, which we believe will take the program to a whole new level. To speak in Steve Jobs’ terms, this all-new version of Papers comes with no less than 21 “tentpole features”, which we will reveal over the course of the next three weeks towards the release on March 8th.

Despite all the new bling, we believe the program still feels instantly familiar to those already using Papers. We tried very hard to prevent making the program more complex, while still adding loads of new features. We achieved quite the opposite in fact, we think that in many ways the program is easier to learn and use.

So finally we’re returning to our true love, Papers for Mac. What took you so long?!

To some it might have seen that we had abandoned the Mac, that we were more focused on Papers for iPhone and, more recently, Papers for iPad. Some even started mentioning Duke Nukem, and that we lost interest in the Mac. But nothing could be further from the truth. For the last 2 years we’ve been working day and night on Papers2 for Mac, it was just that we had taken on a monumental task, certainly considering Mekentosj was a one-man-band up until only one and a half year ago. That’s not necessarily bad though. Having personally answered each and every email we received (see below what that means), there wasn’t a single pixel, feature or checkbox of which I wasn’t aware what people liked or disliked, what they wanted to see added or improved. And one thing quickly became clear, to get to the next level, we had to start from scratch.

When I originally wrote Papers in between PhD and postdoc I wrote it with the PhD student in mind that I had been in the  recent years leading up to developing the program; a cell biologist dealing with an overkill of journal articles found though PubMed. This is how we designed the program, a world ruled by articles and journals, what else would you possibly need?

As Papers became rapidly more popular I realized how wrong I was, and how many professionals found a use for Papers. And so we started extending the application on a foundation that was never meant to support other types of documents, other search engines, etc. After 2 years it started to slow us down and worse, it started to cause bugs and issues that were hard to resolve. With Papers2 we wanted to change all of that, but it meant we had to start from scratch. We now support 85+ different types of documents, but more importantly, we now have a foundation that allows us to rapidly add more features in the coming months. Will Papers2 contain everything you asked for? I’m pretty sure it won’t, we had to restrain ourselves and stop somewhere, but you’ll see us add new features at a rate not seen before.

Mekentosj 2.0

Mekentosj 2.0

Perhaps as exciting as the upcoming Papers2 for Mac update, is the fact that in many ways March 8th could also be considered the launch date of Mekentosj 2.0. Things have grown over the past 4 years from a fresh graduate scratching his own itch, to postdoc quitting early to start a full time one-man-band, to what is now a small but thriving independent software company with 6 people working from 4 different continents.

And as Papers has gone to the next level, so has Mekentosj. Having to do everything yourself doesn’t scale, and with at least 100 emails ending up in your inbox every day, that quickly becomes painfully clear. Fortunately, over the last one and a half year we saw the addition of some of the most talented team members, and everything we do at Mekentosj has become a team effort, including dealing with support emails (we still answer each individual email personally though!). Today’s announcement is the first publicly visible result of a great team at work, it’s been an absolute pleasure to finally get to the point where we can start showing you what the new Mekentosj can do.

Over the course of the next three weeks we’ll be revealing a new feature every day, be sure to check back regularly to have a sneak peek at what’s coming on March 8th. In addition you can expect a new series of posts here about some of the design philosophies and features in Papers2, behind the scenes on the way we work and what you can expect from us in the future.

We’ve come a long way, and it has been an amazing ride thus far, but it’s only the beginning. We are excited to have you on board as we continue to move forward.
Thank you for supporting Papers!
Alex

Papers wins 2010 Ars Design Award!

Monday, June 7th, 2010

WOW! This morning we got the news that Papers has won another design award! Ars technica, one of our favorite websites, decided to hold its own ADA (Ars Design Awards) ceremony when Apple announced it wouldn’t do one for Mac OS X apps this year. Ars asked its readers to nominate the best Mac OS X apps in 5 different categories and we were very happy to see Papers nominated for Best Education app. And then came the announcement on the Ars technica website this morning that we had actually won! We’re very honoured and happy that Papers has now got two design awards behind its name. A big thanks to anyone who nominated Papers!

This means we will soon receive a second shiny aluminum cube! Awesome!

Download Papers from here…

Papers: a guided tour

Thursday, September 3rd, 2009

The Chemical Synthesis and Neuroscience group at the University of Munich recently received a guided tour of Papers, courtesy of 2nd year PhD student, Christian Kuttruff.

In this great introduction Christian covers the basics of PDF management with Papers, finding publications with the integrated search engines and (my favourite section), easily assigning article information.

This 7 minute video is the perfect way to get acquainted with Papers, and features some great tips and tricks for power users.

There are some other useful screencasts on Christian’s blog, including Essential Mac software for Chemists.

Watch the screencast, via YouTube.

Papers 1.9.3 now fully Snow Leopard compatible

Monday, August 31st, 2009

We’re happy to announce the immediate availability of Papers 1.9.3, a free update to our popular personal library of science. Most important this update brings full compatibility with Mac OS X 10.6 Snow Leopard. That’s not all however, it brings over 50 bug fixes and improvements as well. Whether you’re on 10.4 Tiger, 10.5 Leopard or the brand new 10.6 Snow Leopard, this is a must-have update for Papers users!

Papers 1.9.2

Download Papers 1.9.3 now from here and update today…